singscore
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see singscore.
Rank-based single-sample gene set scoring method
Bioconductor version: 3.7
A simple single-sample gene signature scoring method that uses rank-based statistics to analyze the sample's gene expression profile. It scores the expression activities of gene sets at a single-sample level.
Author: Momeneh Foroutan [aut, ctb], Dharmesh Bhuva [aut, ctb], Ruqian Lyu [aut, cre]
Maintainer: Ruqian Lyu <ruqianl at student.unimelb.edu.au>
citation("singscore")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("singscore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("singscore")| singscore | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, GeneSetEnrichment, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-3 |
| Depends | R (>= 3.5), GSEABase |
| Imports | methods, stats, graphics, ggplot2, ggsci, grDevices, ggrepel, plotly, tidyr, plyr, magrittr, reshape, edgeR, RColorBrewer, Biobase, BiocParallel, SummarizedExperiment, matrixStats |
| System Requirements | |
| URL | https://github.com/DavisLaboratory/singscore |
| Bug Reports | https://github.com/DavisLaboratory/singscore/issues |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | singscore_1.0.0.tar.gz |
| Windows Binary | singscore_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | singscore_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/singscore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/singscore |
| Package Short Url | https://bioconductor.org/packages/singscore/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |