mdgsa
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mdgsa.
Multi Dimensional Gene Set Analysis.
Bioconductor version: 3.7
Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.
Author: David Montaner <dmontaner at cipf.es>
Maintainer: David Montaner <dmontaner at cipf.es>
Citation (from within R, enter
citation("mdgsa")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mdgsa")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mdgsa")| mdgsa_vignette | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, GO, GeneSetEnrichment, Pathways, Software |
| Version | 1.12.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL |
| Depends | R (>= 2.14) |
| Imports | AnnotationDbi, DBI, GO.db, KEGG.db, cluster, Matrix |
| System Requirements | |
| URL | https://github.com/dmontaner/mdgsa http://www.dmontaner.com |
See More
| Suggests | BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | mdgsa_1.12.1.tar.gz |
| Windows Binary | mdgsa_1.12.1.zip |
| Mac OS X 10.11 (El Capitan) | mdgsa_1.12.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mdgsa |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mdgsa |
| Package Short Url | https://bioconductor.org/packages/mdgsa/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |