TPP
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TPP.
Analyze thermal proteome profiling (TPP) experiments
Bioconductor version: 3.7
Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).
Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber
Maintainer: Dorothee Childs <dorothee.childs at embl.de>
citation("TPP")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TPP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TPP")| TPP_introduction_1D | R Script | |
| TPP_introduction_2D | R Script | |
| TPP_introduction_NPARC | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 3.8.5 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), Biobase, dplyr, magrittr, tidyr |
| Imports | biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, sme, splines, stats, stringr, utils, VennDiagram, VGAM |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TPP_3.8.5.tar.gz |
| Windows Binary | TPP_3.8.5.zip |
| Mac OS X 10.11 (El Capitan) | TPP_3.8.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TPP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TPP |
| Bioc Package Browser | https://code.bioconductor.org/browse/TPP/ |
| Package Short Url | https://bioconductor.org/packages/TPP/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |