RamiGO
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RamiGO.
AmiGO visualize R interface
Bioconductor version: 3.7
R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Deprecated:Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.
Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains
Maintainer: Markus Schroeder <markus.schroeder at ucdconnect.ie>
citation("RamiGO")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RamiGO")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RamiGO")| RamiGO: An Introduction (HowTo) | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | Artistic-2.0 |
| Depends | gsubfn, methods |
| Imports | igraph, RCurl, png, graph |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RamiGO_1.28.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RamiGO |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RamiGO |
| Package Short Url | https://bioconductor.org/packages/RamiGO/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |