scRNAseq

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see scRNAseq.

A Collection of Public Single-Cell RNA-Seq Datasets


Bioconductor version: 3.6

Gene-level read counts of three public scRNA-seq datasets. See vignette for details.

Author: Davide Risso [aut, cre, cph], Michael Cole [aut]

Maintainer: Davide Risso <risso.davide at gmail.com>

Citation (from within R, enter citation("scRNAseq")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scRNAseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SequencingData
Version 1.4.0
License CC0
Depends R (>= 3.3), SummarizedExperiment
Imports
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me clusterExperiment, scone, SingleCellExperiment, zinbwave
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scRNAseq_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/scRNAseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scRNAseq
Package Short Url https://bioconductor.org/packages/scRNAseq/
Package Downloads Report Download Stats