BSgenome.Drerio.UCSC.danRer7

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Drerio.UCSC.danRer7.

Full genome sequences for Danio rerio (UCSC version danRer7)


Bioconductor version: 3.6

Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Drerio.UCSC.danRer7")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Drerio.UCSC.danRer7")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Danio_rerio, Genetics
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
System Requirements
URL
See More
Suggests GenomicFeatures
Linking To
Enhances
Depends On Me BSgenome.Drerio.UCSC.danRer7.masked, cleanUpdTSeq
Imports Me BSgenome.Drerio.UCSC.danRer7.masked
Suggests Me CAGEr, ChIPpeakAnno, heatmaps, motifbreakR, seqPattern
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Drerio.UCSC.danRer7_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/BSgenome.Drerio.UCSC.danRer7/
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