GOstats
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see GOstats.
Tools for manipulating GO and microarrays
Bioconductor version: 3.6
A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.
Author: Robert Gentleman [aut], Seth Falcon [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("GOstats")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOstats")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOstats")| Hypergeometric tests for less common model organisms | R Script | |
| Hypergeometric Tests Using GOstats | R Script | |
| Visualizing Data Using GOstats | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software |
| Version | 2.44.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.43.2), graph |
| Imports | methods, stats, stats4, AnnotationDbi(>= 0.0.89), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), AnnotationForge, Rgraphviz |
| System Requirements | |
| URL |
See More
| Suggests | hgu95av2.db(>= 1.13.0), ALL, multtest, genefilter, RColorBrewer, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | MineICA, RDAVIDWebService |
| Imports Me | affycoretools, attract, categoryCompare, facopy, ideal, MIGSA, mvGST, pcaExplorer, ProCoNA, ReportingTools, systemPipeR |
| Suggests Me | BiocCaseStudies, Category, eisa, fastLiquidAssociation, GSEAlm, HTSanalyzeR, interactiveDisplay, MineICA, miRLAB, MLP, MmPalateMiRNA, oneChannelGUI, phenoDist, qpgraph, RnBeads, safe |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOstats_2.44.0.tar.gz |
| Windows Binary | GOstats_2.44.0.zip |
| Mac OS X 10.11 (El Capitan) | GOstats_2.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOstats |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOstats |
| Package Short Url | https://bioconductor.org/packages/GOstats/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |