CHANGES IN VERSION 1.5.13 ------------------------ NEW FEATURES * In this version, the methods for missing values impuation from the package imp4p have been disabled because they are still under development. They will be available later. CHANGES IN VERSION 1.5.11 ------------------------ BUG FIXES * In a plot of the Descriptive Statistics tab (For missing values : mvPerLinesHistoPerCondition). When a dataset has conditions with different number of samples, the plot created an error. This bug has been fixed. * Conversion of a text file : when the intensity values have a comma when the number is in exponential notation, there was an error. This bug has been fixed. CHANGES IN VERSION 1.5.9 ------------------------ NEW FEATURES * The agregation methods have been improved and now take less time CHANGES IN VERSION 1.5.7 ------------------------ NEW FEATURES * Adds support for hierarchical experimental design * Integrates the missing values imputation with the imp4p package CHANGES IN VERSION 1.5.5 ------------------------ NEW FEATURES * Replacement of XLConnect by the package openxlsx CHANGES IN VERSION 1.5.3 ------------------------ NEW FEATURES * Violin plots are available in the Descriptive Statistics CHANGES IN VERSION 1.4.7 ------------------------ NEW FEATURES * In the export tool, when the user chooses the Excel format, the ID is no longer used to create a new column in the Quantitative Tab. This has no effect on the data. BUG FIXES CHANGES IN VERSION 1.4.6 ------------------------ NEW FEATURES BUG FIXES * The computation of the number of proteins with only specific peptides, shared peptides or a mixture of two has been debugged. CHANGES IN VERSION 1.3.16 ------------------------ NEW FEATURES BUG FIXES * The missing values in the result of the aggregation of peptides into protein have been replaced by NA. Otherwise, there were errors in the display of the heatmap and the correlation matrix * The memory managment in the function mvImage has been optimized CHANGES IN VERSION 1.3.8 ------------------------ NEW FEATURES BUG FIXES * Bug fixed in the Xaxis title of the volcanoplot CHANGES IN VERSION 1.3.6 ------------------------ NEW FEATURES BUG FIXES * A bug fixed in the mvFilter function CHANGES IN VERSION 1.3.5 ------------------------ NEW FEATURES * A busy indicator has been added for long time computation plots and functions BUG FIXES CHANGES IN VERSION 1.3.2 ------------------------ NEW FEATURES BUG FIXES * in the menu "Dataset available", each line is completed with the type of data (peptide or protein) CHANGES IN VERSION 1.3.1 ------------------------ NEW FEATURES * To change the current dataset, the user has only to select the desired one in the menu and the entire interface is automatically updated * It is possible to modify the gradient of colors for the correlation matrix * A new barplot to show the proportion of contaminants and reverse. The computation of these proportions has been debugged * adding a function to create new columns in the protein dataset when the peptides dataset has been aggregated * A feature to build automatically an ID for the MSnset has been added. It helps the user when he do not know which ID column to choose BUG FIXES * A bug fixed in the dfferential analysis tool when there are several conditions