Gaidatzis D, Lerch A, Hahne F and Stadler MB (2015). “QuasR: Quantification and annotation of short reads in R.” Bioinformatics, 31(7), pp. 1130–1132. http://doi.org/10.1093/bioinformatics/btu781, PMID:25417205.
Langmead B, Trapnell C, Pop M and Salzberg SL (2009). “Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.” Genome Biology, 10(3), pp. R25. http://doi.org/10.1186/gb-2009-10-3-r25, PMID:19261174.
Au KF, Jiang H, Lin L, Xing Y and Wong WH (2010). “Detection of splice junctions from paired-end RNA-seq data by SpliceMap.” Nucleic Acids Research, 38(14), pp. 4570–4578. http://doi.org/10.1093/nar/gkq211, PMID:20371516.