Changes in version 1.2.0:

    o   Renamed normalize() to normOffsets().

    o   Added library size specification to DIList methods normOffsets(),
	asDGEList().

    o   Fixed bugs under pathological settings in plotPlaid(), plotDI(),
	rotPlaid(), rotDI().

    o   Optimized C++ code for connectCounts(), squareCounts().

    o   Streamlined various R utilities used throughout all functions.

    o   Added iter_map.py to inst/python, for iterative mapping of DNase
	Hi-C data.

    o   Added the neighborCounts() function, for simultaneous read counting
	and enrichment calculation.

    o   Added exclude for enrichedPairs(), to provide an exclusion zone in
	the local neighborhood.

    o   Switched default colour in rotPlaid(), plotPlaid() to black.

    o   Added compartmentalize() function to identify genomic compartments.

    o   Added domainDirections() function to help identify domains.

    o   Modified correctedContact() to allow distance correction and report
	factorized probabilities directly.

    o   Modified marginCounts() function for proper single-end-like
	treatment of Hi-C data.

    o   Extended clusterPairs() to merge bin pairs from multiple DILists.

    o   Switched to reporting ranges directly from boxPairs(), added
	support for minimum bounding box output.

    o   Modified consolidatePairs() to accept index vectors for greater
	modularity.

    o   Added reference argument for large bin pairs, in filterDirect() and
	filterTrended().

    o   Added filterDiag() convenience function for filtering of
	(near-)diagonal bin pairs.

    o   Slight change to preparePairs() diagnostic reports when
	dedup=FALSE, and for unpaired reads.

    o   Added option for a distance-based threshold to define invalid
	chimeras in preparePairs().

    o   Updated documentation, tests and user's guide.

    o   Added diffHic paper entry to CITATION.

Changes in version 1.0.0:

    o   New package diffHic, for detection of differential interactions
	from Hi-C data.