Changes in version 0.99.1: NEW FEATURES o Added limited support for Heterogeneous Stock mice. o assoc.plot Added strain distribution patterns above the association mapping plot. CHANGES o rankZ Fixed bug relating to NA values. Changes in version 0.99.0: NEW FEATURES o read.vcf reads Sanger SNP VCF files. o assoc.map imputes Sanger SNPs onto DO genomes and performs association mapping. o Fixed bug in kinship.probs in which kinship per chromosome was not calculated correctly. o Improved gene layout algorithm in gene.plot. CHANGES o scanone returns p-values and -log10(p-values). o doqtl.plot plots either LOD or -log10(p-values).