miRNApath

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see miRNApath.

miRNApath: Pathway Enrichment for miRNA Expression Data

Bioconductor version: 3.2

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Author: James M. Ward <jmw86069 at gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell

Maintainer: James M. Ward <jmw86069 at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("miRNApath")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNApath")

Details

Package Archives

Follow Installation instructions to use this package in your R session.