hg19_bins |
A dataframe containing location information for 1MB-size bins within the hg19 genome. This dataset is generated based on the accessed cytoband data and used for CNV frequency calculation from local pgxseg files. |
hg19_cytoband |
A dataframe containing cytoband annotation details extracted from the hg19 gennome. It is used for CNV frequency visualization. |
hg38_bins |
A dataframe containing location information for 1MB-size bins within the hg38 genome. This dataset is generated based on the accessed cytoband data and used for CNV frequency calculation from local pgxseg files. |
hg38_cytoband |
A dataframe containing cytoband annotation details extracted from the hg38 gennome. It is used for CNV frequency visualization. |
pgxCount |
Count samples in one collation of a given filter |
pgxFilter |
Query available filters |
pgxFreqplot |
Plot CNV frequency data |
pgxLoader |
Load data from Progenetix database |
pgxSegprocess |
Extract, analyse and visualize "pgxseg" files |