Changes in version 0.99.0.10 New - (User-facing) An alternative function to plot motif heatmaps using the R pkg seqPattern. Function name: plot_motif_heatmaps2() Changes in version 0.99.0.7 New - (User-facing) Now possible to perform per cluster GO term enrichment analysis via per_cluster_go_term_enrichments() when a orgDb package is available for the organism Changes in version 0.99.0.6 New - (User-facing) Examples added majority of functions using example/dummy data Changes in version 0.99.0.5 Bug-fixes - (User-facing) In per_cluster_annotations(): - Default for clusts set to NULL. This enables cleanly specifying just the BED file as input to tc_gr - Help pages now have examples except for the curate_clusters function. Elaborate documentation for this function is available as part of the vignette Changes in version 0.99.0.4 New features - (User-facing) In write_seqArchR_cluster_track_bed(): - new argument use_q_bound to choose if you wish to use quantiles as tag cluster boundaries - new argument use_as_names to specify any column in info_df to be used as the name column in the output track BED file of clusters - dominant_ctss information for each tag cluster is presented as thickStart thickEnd for ease of visualising. See documentation for more details - (User-facing) In per_cluster_annotations(): - tc_gr can now accept a bedfile to read records as a GRanges object - Details added in documentation for ways to selectively pick clusters to annotate Changes in version 0.99.0.3 Bux-fixes - Fixed bugs in curate_clusters() function, and touch up its documentation Changes in version 0.99.0.2 New features - (User-facing) Parallelization support to speed up annotating genomic regions Changes in version 0.99.0 New - Package ready for Bioconductor submission