SNPlocs.Hsapiens.dbSNP.20101109

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP.20101109.

SNP locations for Homo sapiens (dbSNP Build 132)


Bioconductor version: 3.15

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).

Author: Hervé Pagès

Maintainer: H. Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("SNPlocs.Hsapiens.dbSNP.20101109")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP.20101109")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version 0.99.9
License Artistic-2.0
Depends R (>= 2.10), IRanges, GenomicRanges
Imports methods, S4Vectors, IRanges, GenomicRanges
System Requirements
URL
See More
Suggests Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me VariantAnnotation
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPlocs.Hsapiens.dbSNP.20101109_0.99.9.tar.gz
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macOS Binary (x86_64)
Package Short Url https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP.20101109/
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