genphen
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genphen.
genphen: tool for quantification of genotype-phenotype associations in genome wide association studies (GWAS)
Bioconductor version: 3.15
Genetic association studies help us discover relationships between genotypes and phenotype. genphen is a computational tool for quantification of genotype-phenotype associations using a hybrid approach based on statistical learning techniques and probabilistic models that are analyzed computationally by Bayes inference.
Author: Simo Kitanovski [aut, cre]
Maintainer: Simo Kitanovski <simo.kitanovski at uni-due.de>
citation("genphen")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genphen")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genphen")| genphen overview | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, Classification, FeatureExtraction, Genetics, GenomeWideAssociation, Regression, SequenceMatching, Sequencing, Software, SupportVectorMachine |
| Version | 1.24.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5.0), Rcpp (>= 0.12.17), methods, stats, graphics |
| Imports | rstan (>= 2.17.3), ranger, parallel, foreach, doParallel, e1071, Biostrings, rPref |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/snaketron/genphen/issues |
See More
| Suggests | testthat, ggplot2, gridExtra, ape, ggrepel, knitr, reshape, xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | genphen_1.24.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | genphen_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genphen |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genphen |
| Package Short Url | https://bioconductor.org/packages/genphen/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.15 | Source Archive |