Autotuner

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Autotuner.

Automated parameter selection for untargeted metabolomics data processing


Bioconductor version: 3.15

This package is designed to help faciliate data processing in untargeted metabolomics. To do this, the algorithm contained within the package performs statistical inference on raw data to come up with the best set of parameters to process the raw data.

Author: Craig McLean

Maintainer: Craig McLean <craigmclean23 at gmail.com>

Citation (from within R, enter citation("Autotuner")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Autotuner")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews MassSpectrometry, Metabolomics, Software
Version 1.10.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License MIT + file LICENSE
Depends R (>= 4.0.0), methods, Biobase, MSnbase(>= 2.14.2)
Imports RColorBrewer, mzR, assertthat, scales, entropy, cluster, grDevices, graphics, stats, utils
System Requirements
URL https://github.com/crmclean/Autotuner/
Bug Reports https://github.com/crmclean/Autotuner/issues
See More
Suggests testthat (>= 2.1.0), covr, devtools, knitr, rmarkdown, mtbls2
Linking To
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Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
Source Repository git clone https://git.bioconductor.org/packages/Autotuner
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Autotuner
Package Short Url https://bioconductor.org/packages/Autotuner/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive