BSgenome.Vvinifera.URGI.IGGP8X

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Vvinifera.URGI.IGGP8X.

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 8X)


Bioconductor version: 3.14

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007).

Author: Timothee Flutre [cre,aut]

Maintainer: Timothee Flutre <timothee.flutre at supagro.inra.fr>

Citation (from within R, enter citation("BSgenome.Vvinifera.URGI.IGGP8X")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Vvinifera.URGI.IGGP8X")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Vitis_vinifera
Version 0.1
License CC0
Depends BSgenome(>= 1.38.0)
Imports BSgenome
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Vvinifera.URGI.IGGP8X_0.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/BSgenome.Vvinifera.URGI.IGGP8X/
Package Downloads Report Download Stats