Changes in version 0.99.31                       

  - Added extra filtering for barnyard data (a mixture of multiple
    species).

                       Changes in version 0.99.30                       

  - Added thresholding of number of top genes to use in testing steps.
    This avoids high number of false positives in ultra-high dimensional
    datasets, e.g. 10x barnyard data.

                       Changes in version 0.99.29                       

  - Updated functions of calculating Pearson correlation in sparse
    matrix. New functions are more accurate.

                       Changes in version 0.99.25                       

  - Changed R dependency back to 4.0.0.

                       Changes in version 0.99.24                       

  - Removed direct download files in vignettes to speed up building.
  - Changed R dependencies so that package can be built in older R
    versions.
  - Changed vignette title to match the citation.

                       Changes in version 0.99.23                       

  - Minor edit of README.md

                       Changes in version 0.99.22                       

  - Received comments from Bioconductor reviewer.
  - Moved BiocStyle from Imports: to Suggests:.
  - Modified vignettes. Deleted GitHub installation instruction.
  - Changed default value of Ncores to be 2.
  - Changed output of CB2FindCell to be an SummarizedExperiment object.
    Changed GetCellMat accordingly. Changed examples and testthat
    accordingly.

                       Changes in version 0.99.21                       

  - Updated testthat scripts.
  - Minor bug fix in Read10xRaw.R. Added as.numeric when building sparse
    matrix.

                       Changes in version 0.99.20                       

  - Updated citation.

                       Changes in version 0.99.19                       

  - Minor edits on package vignettes.

                       Changes in version 0.99.18                       

  - Minor bug fix.
  - Minor edits on package vignettes.

                       Changes in version 0.99.17                       

  - Initial version preparing to submit to Bioconductor.

                       Changes in version 0.99.16                       

  - Change function name Read10X to be Read10xRaw, Read10Xh5 to be
    Read10xRawH5.
  - Change parameter name PrintProg to be verbose.
  - Minor edits on parameter description of function GetCellMat.
  - Added a quick function QuickCB2 by combining all necessary functions
    into one. Input: directory of raw data. Output: filtered matrix, or
    a Seurat object containing filtered matrix.

                       Changes in version 0.99.15                       

  - When dividing barcodes into groups with similar barcode counts, the
    last group will be combined with second last group if the number of
    barcodes in the last group is less than half of that in the second
    last group.

                       Changes in version 0.99.14                       

  - Change parameter names to match those in the paper: retain -> upper.
    background -> lower.

                       Changes in version 0.99.13                       

  - Rounded baseline threshold.
  - Minor changes on vignette.
  - Bug fix when retain threshold is larger than any barcode.

                       Changes in version 0.99.12                       

  - Minor changes on vignette.
  - Baseline (2 * background) clustering threshold will be printed out.

                       Changes in version 0.99.11                       

  - Customized knee point calculation function.
  - CB2FindCell will print out retain threshold in standard output.
  - Minor bug fixes when there is no cluster.

                       Changes in version 0.99.0                        

  - Created initial github page.
  - Created package.
  - Created vignettes.
  - Checked package... passed R CMD check and BiocCheck.
  - Ready to submit to Bioconductor.