Changes in version 0.3.2 - IMPORTANT: - Implemented data-raw for reproducibility - MINOR: - Changed xlim of norm. distr. plot in plotPeriodicityResults() Changes in version 0.3.1 (2020-05-05) - IMPORTANT: - rollmean(k=3) is now applied before normalisation as well, on the raw distribution vector - plotPeriodicityResults() output returns one single plot (with cowplot) - getPeriodicityTrack() now returns the Rle - Improved plotting functions -now show shuffled for plotPeriodicityResults() - Added ggplot2 theming - MINOR: - Changed many variable names (all to snake_case) - sampleGRanges is now full-fledged function (GRanges, DNAStringSet, character and BSgenome methods) - sampleGenome is an alias for sampleGRanges.character - Added sacCer3 to getPeriodicity BSgenomes - Added DNAString method for getPeriodicity - Added a vignette describing the internal steps - Clarified user-level functions in README - Added ce11_TSSs data - Renamed generateperiodicitytrack as getPeriodicityTrack - Renamed variables in getFPI and getPeriodicity - Created a utility char2BSgenome() Changes in version 0.3.0 (2020-05-03) - Added tests - Added getFPI function - cleaned-up functions - cleaned-up function dependencies - Added toy data - Added vignette Changes in version 0.2.1 (2020-03-04) - Added Travis build check - Simplified README.md