CHANGES IN VERSION 2.1.0
-------------------------
MAJOR UPDATES
o (2.1.1) In accordance with the deprecated caching location, upgraded to
error/defunct from warning/deprecated in preparaion for removal of
dependency next release
CHANGES IN VERSION 1.99.0
-------------------------
MAJOR UPDATES
o (1.99.0) The default caching location has changed. Instead of
rappdirs::user_cache_dir using tools::R_user_dir. To avoid conflicting
caches, a user will have to manage an old cache location before
proceeding. Information for handling an old cache location is provided in
the vignette.
o (1.99.0) Another major change, a default caching location is automatically
created in a non interactive session instead of using a temporary
location. In an interactive session, a user is still prompted for
permission.
CHANGES IN VERSION 1.17.0
------------------------
o (1.17.1) Removed vignette for creating annotation hub package. Reference
and refer to single vignette in AnnotationHub
CHANGES IN VERSION 1.15.0
------------------------
BUG FIXES
o (1.15.2) Proxy message formatting
USER-VISIBLE CHANGES
o (1.15.4) less stringent internet check
o (1.15.3) Add link for github issue reporting
o (1.15.1) Add hubs@bioconductor.org email for help
CHANGES IN VERSION 1.13.0
------------------------
NEW FEATURES
o (1.13.5) New function removeResources for removing locally downloaded
cached resources. Nicer interface than using cache. Improved documentation
on use of setting a cache to NULL to also remove resources.
o (1.13.4) Adds option ask to constructor. Default: True. Ask will ask user
to create default ExperimentHub location and if in an non interactive
session utilize a temporary directory. If False, the default directory is
created and utilized without prompting.
BUG FIXES
o (1.13.8) Updated has_internet to nslookup. Certain locations block
has_internet from running (block google dns). switched so can query the hub
directly
o (1.13.7) Fixed messages to be more informative
o (1.13.2) Aaron's corrections to setExperimentHubOptions.
USER-VISIBLE CHANGES
o (1.13.1) Match ERROR message when resource not found in database. Instead
of a generic "unknown key" give more detailed information. This is
consistent with AnnotationHub/Hub-classes. If resource hasn't been
completely removed from database, gives when the resource was removed. If
the resource is available but after the snapshot date being utilized,
specialized message.
CHANGES IN VERSION 1.11.0
------------------------
NEW FEATURES
o (1.11.2) system environment variable to control localHub option for
creating hub based only on previously downloaded resources
o (1.11.5) With change in AnnotationHub. All force redownload of Hub sqlite
file with refreshHub
BUG FIXES
o (1.11.2) Fix localHub when no internet connection. The internal use of
isDevel was preventing Hub creation when no internet connection. Fixed by
checking connection. This code pretained to orgDb filters
CHANGES IN VERSION 1.9.0
------------------------
SIGNIFICANT USER-VISIBLE CHANGES
o (1.9.2) The Hubs have been updated to use BiocFileCache as a backend
utility for managing and downloading resources. This allows for file
specific caching mechanism. This change is a significant user change as it
changed the default directories for the Hubs (AnnotationHub/ExperimentHub)
as well as the base directory no longer being hidden.
CHANGES IN VERSION 1.4.0
------------------------
NEW FEATURES
o ExperimentHub will now work offline utilizing argument 'localHub'; will
also use this option automatically if no internet connection is detected.
o Add new vignette for creating ExperimentHub packages
MODIFICATIONS
o Update AnnotationHub dependency; new resource class RDSResource
o move listResources and loadResources from AnnotationHub to here
BUG FIXES
o Fix typo in createHubAccessors with hard coded value
VERSION 1.0.0
------------------------
Package added to release BioC 3.4