iSEEu

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see iSEEu.

iSEE Universe


Bioconductor version: 3.14

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] , Charlotte Soneson [aut] , Federico Marini [aut] , Aaron Lun [aut] , Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEu")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")
Panel universe HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version 1.6.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License MIT + file LICENSE
Depends iSEE
Imports methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2, DT, stats, colourpicker, shinyAce
System Requirements
URL https://github.com/iSEE/iSEEu
Bug Reports https://github.com/iSEE/iSEEu/issues
See More
Suggests scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEu_1.6.0.tar.gz
Windows Binary iSEEu_1.6.0.zip
macOS 10.13 (High Sierra) iSEEu_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSEEu
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEu
Bioc Package Browser https://code.bioconductor.org/browse/iSEEu/
Package Short Url https://bioconductor.org/packages/iSEEu/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive