Sushi

This package is for version 3.14 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Sushi.

Tools for visualizing genomics data

Bioconductor version: 3.14

Flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures

Author: Douglas H Phanstiel <dphansti at stanford.edu>

Maintainer: Douglas H Phanstiel <dphansti at stanford.edu>

Citation (from within R, enter citation("Sushi")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Sushi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Sushi")

Sushi	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, Genetics, HiC, Infrastructure, Sequencing, Software, Visualization
Version	1.32.0
In Bioconductor since	BioC 2.14 (R-3.1) (10 years)
License	GPL (>= 2)
Depends	R (>= 2.10), zoo, biomaRt
Imports	graphics, grDevices
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me	ChromSCape, diffloop, Ularcirc, VaSP
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Sushi_1.32.0.tar.gz
Windows Binary	Sushi_1.32.0.zip
macOS 10.13 (High Sierra)	Sushi_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Sushi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Sushi
Bioc Package Browser	https://code.bioconductor.org/browse/Sushi/
Package Short Url	https://bioconductor.org/packages/Sushi/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive