DAPAR

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see DAPAR.

Tools for the Differential Analysis of Proteins Abundance with R


Bioconductor version: 3.14

This package contains a collection of functions for the visualisation and the statistical analysis of proteomic data.

Author: Samuel Wieczorek [aut, cre], Florence Combes [aut], Thomas Burger [aut], Vasile-Cosmin Lazar [ctb], Enora Fremy [ctb], Helene Borges [ctb]

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPAR")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DAPAR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAPAR")
Prostar user manual PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, GO, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.26.1
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License Artistic-2.0
Depends R (>= 4.1.0)
Imports Biobase, MSnbase, tibble, RColorBrewer, stats, preprocessCore, Cairo, png, lattice, reshape2, gplots, pcaMethods, ggplot2, limma, knitr, tmvtnorm, norm, impute, stringr, grDevices, graphics, openxlsx, utils, cp4p (>= 0.3.5), scales, Matrix, vioplot, imp4p (>= 1.1), forcats, methods, DAPARdata(>= 1.24.0), siggenes, graph, lme4, readxl, highcharter, clusterProfiler, dplyr, tidyr, AnnotationDbi, tidyverse, vsn, FactoMineR, factoextra, multcomp, purrr, visNetwork, foreach, parallel, doParallel, igraph, dendextend, Mfuzz, apcluster, diptest, cluster
System Requirements
URL http://www.prostar-proteomics.org/
Bug Reports https://github.com/samWieczorek/DAPAR/issues
See More
Suggests BiocGenerics, testthat, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me Prostar
Suggests Me DAPARdata
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DAPAR_1.26.1.tar.gz
Windows Binary DAPAR_1.26.1.zip
macOS 10.13 (High Sierra) DAPAR_1.26.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/DAPAR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DAPAR
Bioc Package Browser https://code.bioconductor.org/browse/DAPAR/
Package Short Url https://bioconductor.org/packages/DAPAR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive