gcrma
Background Adjustment Using Sequence Information
Bioconductor version: 2.6
Background adjustment using sequence information
Author: Jean(ZHIJIN) Wu, Rafael Irizarry with contributions from James MacDonald <jmacdon at med.umich.edu> Jeff Gentry
Maintainer: Z. Wu <zwu at stat.brown.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("gcrma")
To cite this package in a publication, start R and enter:
citation("gcrma")
Documentation
| R Script | gcrma1.2 | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing |
| Depends | R (>= 2.6.0), affy(>= 1.23.2), graphics, methods, stats, utils |
| Imports | Biobase, affy(>= 1.23.2), affyio(>= 1.13.3), Biostrings(>= 2.11.32), splines |
| Suggests | affydata, matchprobes, tools, splines |
| System Requirements | |
| License | LGPL |
| URL | |
| Depends On Me | affyPLM, bgx, simpleaffy, webbioc |
| Imports Me | affycoretools, affyILM, simpleaffy |
| Suggests Me | AffyExpress, ArrayTools, BiocCaseStudies |
| Version | 2.20.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
| Package Source | gcrma_2.20.0.tar.gz |
| Windows Binary | gcrma_2.20.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | gcrma_2.20.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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