Bioconductor version: 2.5
A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level.
Author: Benilton Carvalho <carvalho at bclab.org>, Rafael A. Irizarry with contributions from Ben Bolstad, Vince Carey, Robert Gentleman, Wolfgang Huber
Maintainer: Benilton Carvalho <carvalho at bclab.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("oligo")
To cite this package in a publication, start R and enter:
citation("oligo")
R Script | Analysis of NimbleGen Expression Data with the oligo Package | |
R Script | Classes Used in the Oligo Packages | |
R Script | Oligo Vignette | |
Reference Manual |
biocViews | Microarray, OneChannel, TwoChannel, Preprocessing, SNP, DifferentialExpression, DNAMethylation, ExonArray, GeneExpression, Bioinformatics, DataImport, Transcription, ChIPchip, CopyNumberVariants, CpGIsland |
Depends | R (>= 2.10.0), oligoClasses(>= 1.7.12), preprocessCore(>= 1.7.4) |
Imports | splines, affxparser(>= 1.17.3), graphics, utils, stats, DBI (>= 0.2-4), Biobase(>= 2.5.5), methods, affyio(>= 1.13.3) |
Suggests | hapmap100kxba, pd.mapping50k.xba240, pd.hg18.60mer.expr, maqcExpression4plex, genefilter, limma, RColorBrewer |
System Requirements | |
License | LGPL (>= 2) |
URL | |
Depends On Me | ITALICS, makePlatformDesign, pdInfoBuilder |
Imports Me | |
Suggests Me | hapmap100khind, hapmap100kxba, hapmap500knsp, hapmap500ksty, hapmapsnp5, hapmapsnp6, maqcExpression4plex, oligoClasses |
Version | 1.10.4 |
Since | Bioconductor 2.0 (R-2.5) |
Package Source | oligo_1.10.4.tar.gz |
Windows Binary | oligo_1.10.4.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | oligo_1.10.4.tgz |
Package Downloads Report | Download Stats |
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