Bioconductor version: 2.5
The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.
Author: Jelle Goeman <j.j.goeman at lumc.nl> and Jan Oosting <j.oosting at lumc.nl>
Maintainer: Jelle Goeman <j.j.goeman at lumc.nl>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("globaltest")
To cite this package in a publication, start R and enter:
citation("globaltest")
R Script | Global Test | |
R Script | Global Test (deprecated version 4) | |
Reference Manual |
biocViews | Microarray, OneChannel, Bioinformatics, DifferentialExpression, GO, Pathways |
Depends | methods |
Imports | Biobase(>= 2.5.5), survival, AnnotationDbi, annotate, multtest, graphics |
Suggests | vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase(>= 2.5.5), survival, GSEABase |
System Requirements | |
License | GPL (>= 2) |
URL | http://www.msbi.nl/goeman |
Depends On Me | GlobalAncova |
Imports Me | SIM |
Suggests Me | topGO |
Version | 5.0.2 |
Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Source | globaltest_5.0.2.tar.gz |
Windows Binary | globaltest_5.0.2.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | globaltest_5.0.2.tgz |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!