\name{summary-methods} \docType{methods} \alias{summary-methods} \alias{summary,ANY-method} \alias{summary,SnpCallSet-method} \alias{summary,AnnotatedSnpSet-method} \alias{summary,oligoSnpSet-method} \title{Methods for Function summary} \description{ Methods for function \code{summary} } \section{Methods}{ \describe{ \item{object = "ANY"}{describe this method here } \item{object = "SnpCallSet"}{calculates percent homozygous calls, and percent heterozygous calls for each chromosome, and then aggregated over all autosomes.} \item{object = "AnnotatedSnpSet"}{calculates average copy number, standard deviation of copy number, percent homozygous calls, and percent heterozygous calls for each chromosome, and then aggregated over all autosomes.} }} \keyword{methods}