To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Hsapiens.UCSC.hg19")

In most cases, you don't need to download the package archive at all.

BSgenome.Hsapiens.UCSC.hg19

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg19.

Homo sapiens (Human) full genome (UCSC version hg19)

Bioconductor version: 2.12

Homo sapiens (Human) full genome as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BSgenome.Hsapiens.UCSC.hg19")

Documentation

PDF   Reference Manual

Details

biocViews AnnotationData, Genetics, Homo_sapiens
Version 1.3.19
License Artistic-2.0
Depends BSgenome(>= 1.25.4)
Imports BSgenome
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me chimera, FDb.InfiniumMethylation.hg19, IlluminaHumanMethylation450kprobe
Imports Me
Suggests Me biovizBase, BSgenome, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, GenomicFeatures, ggbio, gmapR, Gviz, MEDIPS, MiRaGE, oneChannelGUI, r3Cseq, R453Plus1Toolbox, RSVSim, rtracklayer, SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20110815, SNPlocs.Hsapiens.dbSNP.20111119, SNPlocs.Hsapiens.dbSNP.20120608, VariantAnnotation

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BSgenome.Hsapiens.UCSC.hg19_1.3.19.tar.gz
Windows Binary BSgenome.Hsapiens.UCSC.hg19_1.3.19.zip
Mac OS X 10.6 (Snow Leopard) BSgenome.Hsapiens.UCSC.hg19_1.3.19.tgz
Package Short Url http://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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