To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bumphunter")

In most cases, you don't need to download the package archive at all.

bumphunter

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see bumphunter.

Bump Hunter

Bioconductor version: 2.12

Tools for finding bumps in genomic data

Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee

Maintainer: Rafael A. Irizarry <rafa at jhu.edu>

Citation (from within R, enter citation("bumphunter")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bumphunter")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bumphunter")

PDF	R Script	The bumphunter user's guide
PDF		Reference Manual

biocViews	DNAMethylation, Epigenetics, Infrastructure, MultipleComparisons, Software
Version	1.0.2
In Bioconductor since	BioC 2.12 (R-3.0) (3 years)
License	Artistic-2.0
Depends	R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel
Imports	matrixStats, limma, itertools, doRNG
LinkingTo
Suggests	limma, RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	bumphunter_1.0.2.tar.gz
Windows Binary	bumphunter_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	bumphunter_1.0.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/bumphunter/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/bumphunter/
Package Downloads Report	Download Stats

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