To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rtreemix")

In most cases, you don't need to download the package archive at all.

Rtreemix

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see Rtreemix.

Rtreemix: Mutagenetic trees mixture models.

Bioconductor version: 2.12

Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Author: Jasmina Bogojeska

Maintainer: Jasmina Bogojeska <jasmina at mpi-inf.mpg.de>

Citation (from within R, enter citation("Rtreemix")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rtreemix")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rtreemix")

 

PDF ClassDiagram.pdf
PDF ExtendedVignette.pdf
PDF R Script Rtreemix
PDF topologies.pdf
PDF   Reference Manual

Details

biocViews Bioinformatics, Software
Version 1.22.0
In Bioconductor since BioC 2.2 (R-2.7) (8 years)
License LGPL
Depends R (>= 2.5.0), methods, graph, Biobase
Imports methods, graph, Biobase, Hmisc
LinkingTo
Suggests Rgraphviz
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rtreemix_1.22.0.tar.gz
Windows Binary Rtreemix_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Rtreemix_1.22.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Rtreemix/tree/release-2.12
Package Short Url http://bioconductor.org/packages/Rtreemix/
Package Downloads Report Download Stats

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