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Developer Day 2014

Developer Day is part of the Bioconductor annual conference; Developer Day is on July 30,

  1. This page is under active development, and will be until July 30!

A Google doc for public notes is available.

Tentative schedule

9:00 - 12:00 Morning

  • 9:00 - 9:45: Welcome; Project Status and Updates. Martin Morgan, Valerie Obenchain, Sonali Arora, Dan Tenebaum, Nate Hayden, Hervé Pagès, Marc Carlson.

  • 9:45 - 10:15: Group Activity

  • 10:15 - 10:45: Break

  • 10:45 - 12:00: Flashlight Presentations (the following are not necessarily in the order of presentation).

    • Di Wu. Rank-based Rotation Gene Set Enrichment Analysis (ROMER), accounting for genewise correlation and dealing with complex designs.
    • Ying Shen. ASSIGN: Context-specific and Integrative Genomic Profiling of Heterogeneous Biological Pathways.
    • Mark Adams. mygene.R: An R package to access MyGene.
    • Michael Love. Shiny clickable plots.
    • Stephanie Hicks. When to use quantile normalization?
    • Leonardo Rodrigues. LAT, streamlining lipid data analysis in R.
    • Robert Castelo. Integrated variant annotation and filtering using R/Bioconductor and the VariantFiltering package.
    • Jianhong Ou. motifStack for graphic representation of multiple motifs in one canvas.
    • Laurent Gatto. Makefile for R packages: maker.
    • Houtan Noushmehr. Bioconductor in Latin America: LAb.

12:00 - 1:00 Lunch

1:00 - 5:00 Afternoon

  • 1:00 - 1:30: Community Needs

  • 1:30 - 2:45: Developer Workshops (ad hoc)

  • 2:45 - 3:15: Break

  • 3:15 - 4:30: Developer Workshops (ad hoc)

  • 4:30 - 5:00: Developer Day Address: George Ostrouchov