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<h1 class="documentFirstHeading">basicr.R</h1>
<div class="documentDescription"></div>
<div class="plain">
<p>###################################################
### chunk number 1: lkcon
###################################################
x <- c(1,2,3,4)
x<a href="#ref2">[2]</a>
y <- c(5,6,7,8)
y[c(2,3)]
m <- cbind(x,y)
m
m[,"x"]</p>
<p>###################################################
### chunk number 2: lkna
###################################################
names(x) <- c("a", "b", "c", "d")
x["b"]
rownames(m) <- LETTERS<a href="#ref1:4">[1:4]</a>
m
m["A", "y"]</p>
<p>###################################################
### chunk number 3: lklit
###################################################
litdf <- data.frame(samp1=c(33,22,12),samp2=c(44,111,13))
rownames(litdf) <- c("CRP", "BRCA1", "HOXA")
litdf
litdf["CRP",]
litdf[,"samp1"]
litdf["HOXA", "samp2"]</p>
<p>###################################################
### chunk number 4: lksel
###################################################
x
y
keep <- c(TRUE, TRUE, FALSE, FALSE, TRUE)
x<a href="#refkeep">[keep]</a>
x[y>6]
which(y>6)</p>
<p>###################################################
### chunk number 5: lkoth
###################################################
gender <- factor(c("M", "M", "F", "F"))
gender
season <- ordered(c("spring", "summer", "fall", "winter"),
levels=c("spring", "summer", "fall", "winter"))
season
df <- data.frame(m,gender,season)
df</p>
<p>###################################################
### chunk number 6: acc
###################################################
df
df$gender
df["B",]
z <- "season"
df[<a href="#refz">[z]</a>]</p>
<p>###################################################
### chunk number 7: mkdf2
###################################################
df2 <- data.frame(x=c(2,3,4,5), z=c(1,6,7,8))</p>
<p>###################################################
### chunk number 8: lkm1
###################################################
df
df2
merge(df,df2)</p>
<p>###################################################
### chunk number 9: mkdf3
###################################################
merge(df,df2,all=TRUE)</p>
<p>###################################################
### chunk number 10: lklist
###################################################
l1 <- list(df, x=x, fundem=mean)
l1</p>
<p>###################################################
### chunk number 11: dosp
###################################################
dx <- c("ALL", "ALL", "AML", "AML", "ALL", "ALL", "ALL", "AML")
ddr1 <- c(12.2, 13.1, 7.2, 6.4, 14.2, 15.3, 9.2, 10.0)
split(ddr1,dx)</p>
<p>###################################################
### chunk number 12: lkl
###################################################
l1[<a href="basicr.R#ref1">[1]</a>]
l1$x
l1$fund</p>
<p>###################################################
### chunk number 13: lkran
###################################################
table(rpois(1000, 3))
table(rbinom(1000,5,.5))
sd(rnorm(1000,0,.4))
sd(rnorm(1000,0,.4))
set.seed(1234)
sd(rnorm(1000,0,.4))
sd(rnorm(1000,0,.4))
set.seed(1234)
sd(rnorm(1000,0,.4))</p>
<p>###################################################
### chunk number 14: lkfun
###################################################
myfun1 <- function(x,y) {
x+3*y
}
myfun1(2,3)</p>
<p>###################################################
### chunk number 15: lkfun2
###################################################
myfun1(2,c(3,4,5,6))</p>
<p>###################################################
### chunk number 16: lkb
###################################################
4 <em> c(2,3,4,5)
c(2,3) </em> c(4,5,6)</p>
<p>###################################################
### chunk number 17: lkit
###################################################
for (i in 1:2) print(i,season<a href="basicr.R#refi">[i]</a>)
for (i in 1:3) print(l1<a href="basicr.R#refi">[i]</a>)
for (s in season) print(s)
for (s in as.character(season)) print(s)</p>
<p>###################################################
### chunk number 18: lkap
###################################################
m
apply(m,1,sum)
apply(m,2,"^",3)</p>
<p>###################################################
### chunk number 19: eval=FALSE
###################################################
## date1 <- date()</p>
<p>###################################################
### chunk number 20: doitran
###################################################
set.seed(1234)
sink(file="sink1.txt")
rnorm(5)</p>
<p>###################################################
### chunk number 21: eval=FALSE
###################################################
## sink()
## readLines("sink1.txt")</p>
<p>###################################################
### chunk number 22: eval=FALSE
###################################################
## length(letters)</p>
<p>###################################################
### chunk number 23: eval=FALSE
###################################################
## length(letters==LETTERS)</p>
<p>###################################################
### chunk number 24: eval=FALSE
###################################################
## all(letters==tolower(LETTERS))</p>
<p>###################################################
### chunk number 25: eval=FALSE
###################################################
## which( letters %in% c("a", "d") )</p>
<p>###################################################
### chunk number 26: eval=FALSE
###################################################
## which( c("a", "d") %in% letters )</p>
<p>###################################################
### chunk number 27: eval=FALSE
###################################################
## letters[ LETTERS > "W" ]</p>
<p>###################################################
### chunk number 28: eval=FALSE
###################################################
## letters[ !LETTERS > "C" ]</p>
<p>###################################################
### chunk number 29: eval=FALSE
###################################################
## sum(LETTERS > "c")</p>
<p>###################################################
### chunk number 30: eval=FALSE
###################################################
## seq(1,20,3)</p>
<p>###################################################
### chunk number 31: eval=FALSE
###################################################
## round(mean(rnorm(1000)),2)</p>
<p>###################################################
### chunk number 32: eval=FALSE
###################################################
## mean(rexp(1000,10))</p>
<p>###################################################
### chunk number 33: dopoi
###################################################
kp <- rpois(100,5)
table(kp)
bp <- rbinom(100,4,.3)
table(bp)
table(bp, kp)
cols <- sample(c("green", "blue"), replace=TRUE, size=100)
table(cols,kp)</p>
<p>###################################################
### chunk number 34: domat
###################################################
x <- matrix(1:10,nr=10,nc=4)
x</p>
<p>###################################################
### chunk number 35: dodat
###################################################
data(iris3)
dim(iris3)
dim(iris3<a href="basicr.R#ref,,1">[,,1]</a>)</p>
<p>###################################################
### chunk number 36: doex
###################################################
expand.grid(c("M", "F"), c("trt", "control"))</p>
<p>###################################################
### chunk number 37: eval=FALSE
###################################################
## dim(cbind(x,x))
## x + 4
## x + x
## 2 <em> x
## x / c(2,3)
## x + x<a href="basicr.R#ref,-1">[,-1]</a>
## t(x) %</em>% x
## row(x)
## nrow(x)
## x[ x<a href="basicr.R#ref,3">[,3]</a> > 5, ]</p>
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