############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical ### ############################################################################## ############################################################################## * checking for file ‘methodical/DESCRIPTION’ ... OK * preparing ‘methodical’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown 2024-07-01 03:17:02.060 R[69777:97193349] XType: Using static font registry. --- finished re-building ‘calculating_methylation_transcription_correlations.Rmd’ --- re-building ‘identifying_tmrs.Rmd’ using rmarkdown --- finished re-building ‘identifying_tmrs.Rmd’ --- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown Quitting from lines 184-199 [unnamed-chunk-7] (working_with_meth_rses.Rmd) Error: processing vignette 'working_with_meth_rses.Rmd' failed with diagnostics: failed to load resource name: AH99003 title: UCSC RepeatMasker annotations (Sep2021) for Human (hg38) reason: unknown input format --- failed re-building ‘working_with_meth_rses.Rmd’ SUMMARY: processing the following file failed: ‘working_with_meth_rses.Rmd’ Error: Vignette re-building failed. Execution halted