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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD INSTALL mbkmeans
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* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘mbkmeans’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Rhdf5lib/include' -I'/home/biocbuild/R/R-4.4.1/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/RcppArmadillo/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Rhdf5lib/include' -I'/home/biocbuild/R/R-4.4.1/site-library/beachmat/include' -I'/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
  862 |         bool status;
      |              ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1592:65:   required from here
 1592 |           model_inner = GMM_arma_covariance_type<arma::gmm_full>(model_inner,
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
 1593 |                                                                  data,
      |                                                                  ~~~~~
 1594 |                                                                  gaussian_comps,
      |                                                                  ~~~~~~~~~~~~~~~
 1595 |                                                                  dist_mode,
      |                                                                  ~~~~~~~~~~
 1596 |                                                                  seed_mode,
      |                                                                  ~~~~~~~~~~
 1597 |                                                                  km_iter,
      |                                                                  ~~~~~~~~
 1598 |                                                                  em_iter,
      |                                                                  ~~~~~~~~
 1599 |                                                                  verbose,
      |                                                                  ~~~~~~~~
 1600 |                                                                  var_floor,
      |                                                                  ~~~~~~~~~~
 1601 |                                                                  seed);
      |                                                                  ~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
 1530 |         bool status;
      |              ^~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1626:65:   required from here
 1626 |           model_inner = GMM_arma_covariance_type<arma::gmm_diag>(model_inner,
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
 1627 |                                                                  data,
      |                                                                  ~~~~~
 1628 |                                                                  gaussian_comps,
      |                                                                  ~~~~~~~~~~~~~~~
 1629 |                                                                  dist_mode,
      |                                                                  ~~~~~~~~~~
 1630 |                                                                  seed_mode,
      |                                                                  ~~~~~~~~~~
 1631 |                                                                  km_iter,
      |                                                                  ~~~~~~~~
 1632 |                                                                  em_iter,
      |                                                                  ~~~~~~~~
 1633 |                                                                  verbose,
      |                                                                  ~~~~~~~~
 1634 |                                                                  var_floor,
      |                                                                  ~~~~~~~~~~
 1635 |                                                                  seed);
      |                                                                  ~~~~~
/home/biocbuild/R/R-4.4.1/site-library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
 1530 |         bool status;
      |              ^~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o mbkmeans.so RcppExports.o mini_batch.o -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-mbkmeans/00new/mbkmeans/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)