############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 dominoSignal ### ############################################################################## ############################################################################## * checking for file ‘dominoSignal/DESCRIPTION’ ... OK * preparing ‘dominoSignal’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘dominoSignal.Rmd’ using rmarkdown Quitting from dominoSignal.Rmd:42-72 [files] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `BiocFileCache::bfcrpath()`: ! not all 'rnames' found or unique. --- Backtrace: ▆ 1. ├─BiocFileCache::bfcrpath(bfc, scenic_regulon_url) 2. └─BiocFileCache::bfcrpath(bfc, scenic_regulon_url) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'dominoSignal.Rmd' failed with diagnostics: not all 'rnames' found or unique. --- failed re-building ‘dominoSignal.Rmd’ --- re-building ‘domino_object_vignette.Rmd’ using rmarkdown --- finished re-building ‘domino_object_vignette.Rmd’ --- re-building ‘plotting_vignette.Rmd’ using rmarkdown --- finished re-building ‘plotting_vignette.Rmd’ SUMMARY: processing the following file failed: ‘dominoSignal.Rmd’ Error: Vignette re-building failed. Execution halted