############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR ### ############################################################################## ############################################################################## * checking for file ‘chromstaR/DESCRIPTION’ ... OK * preparing ‘chromstaR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘chromstaR.Rnw’ using knitr 2025-03-20 20:39:38.419 R[29379:309582125] XType: Using static font registry. 2025-03-20 20:39:38.424 R[29378:309582127] XType: Using static font registry. 2025-03-20 20:39:38.704 R[29380:309582128] XType: Using static font registry. 2025-03-20 20:40:22.559 R[29698:309583103] XType: Using static font registry. 2025-03-20 20:40:22.592 R[29699:309583104] XType: Using static font registry. 2025-03-20 20:40:23.219 R[29697:309583106] XType: Using static font registry. 2025-03-20 20:40:23.252 R[29700:309583105] XType: Using static font registry. Quitting from chromstaR.Rnw:376-396 [multivariate_combinatorial_enrichment] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.chooseEnsemblMirror()`: ! Unable to query any Ensembl site --- Backtrace: x 1. \-biomaRt::useEnsembl(biomart = "ENSEMBL_MART_ENSEMBL", dataset = "rnorvegicus_gene_ensembl") 2. \-biomaRt:::.chooseEnsemblMirror(mirror = mirror, http_config = http_config) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'chromstaR.Rnw' failed with diagnostics: Unable to query any Ensembl site --- failed re-building ‘chromstaR.Rnw’ SUMMARY: processing the following file failed: ‘chromstaR.Rnw’ Error: Vignette re-building failed. Execution halted