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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Voyager.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Voyager_1.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/Voyager.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Voyager/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Voyager’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Voyager’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
calculateMultivariate 47.313  0.897  68.534
plotImage             17.175  1.851  23.875
plotGeometry          15.958  0.610  23.651
calculateBivariate    16.022  0.523  24.091
clusterVariograms     12.618  0.382  17.774
moranPlot             10.126  0.403  14.576
ElbowPlot              9.042  1.227  15.632
plotCellBin2D          9.017  0.368  13.268
plotVariogram          8.412  0.288  12.642
plotSpatialFeature     7.968  0.291  11.450
plotLocalResult        7.746  0.334  11.802
plotCrossVariogram     7.055  0.322  11.004
spatialReducedDim      6.809  0.282   9.865
calculateUnivariate    6.686  0.339  10.338
plotCrossVariogramMap  6.526  0.302  10.125
plotCorrelogram        6.492  0.286   9.793
plotColDataHistogram   6.132  0.283   9.338
plotVariogramMap       5.818  0.257   8.694
plotColDataFreqpoly    5.783  0.283   8.383
plotMoranMC            5.375  0.252   8.414
plotDimLoadings        5.165  0.276   8.275
plotColGraph           5.138  0.275   8.127
multispati_rsp         5.070  0.268   7.428
clusterMoranPlot       4.500  0.253   6.909
clusterCorrelograms    4.035  0.232   6.353
moranBounds            3.892  0.231   6.083
listw2sparse           3.727  0.244   5.954
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK