############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark ### ############################################################################## ############################################################################## * checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK * preparing ‘SummarizedBenchmark’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown 2024-06-09 18:23:20.835 R[13737:28722261] XType: com.apple.fonts is not accessible. 2024-06-09 18:23:20.836 R[13737:28722261] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’ --- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown Quitting from lines 97-102 [run-sim-buildbench] (CaseStudy-SingleCellSimulation.Rmd) Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics: No method returned valid values for any assays! --- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’ --- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown --- finished re-building ‘Feature-ErrorHandling.Rmd’ --- re-building ‘Feature-Iterative.Rmd’ using rmarkdown --- finished re-building ‘Feature-Iterative.Rmd’ --- re-building ‘Feature-Parallel.Rmd’ using rmarkdown --- finished re-building ‘Feature-Parallel.Rmd’ --- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ --- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ --- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’ SUMMARY: processing the following file failed: ‘CaseStudy-SingleCellSimulation.Rmd’ Error: Vignette re-building failed. Execution halted