############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Structstrings.buildbin-libdir && mkdir Structstrings.buildbin-libdir && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL --build --library=Structstrings.buildbin-libdir Structstrings_1.20.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'Structstrings' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DotBracketDataFrame_class.c -o DotBracketDataFrame_class.o DotBracketDataFrame_class.c: In function 'get_base_pairing_per_char_pair': DotBracketDataFrame_class.c:40:29: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'int' [-Wformat=] 40 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close); | ~^ ~~~~~~~~~~~~ | | | | char * int | %d DotBracketDataFrame_class.c:40:31: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat=] 40 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close); | ~^ ~~~~~~~~~~~~~ | | | | char * int | %d DotBracketDataFrame_class.c:52:25: warning: format '%s' expects argument of type 'char *', but argument 2 has type 'int' [-Wformat=] 52 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close); | ~^ ~~~~~~~~~~~~ | | | | char * int | %d DotBracketDataFrame_class.c:52:27: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat=] 52 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close); | ~^ ~~~~~~~~~~~~~ | | | | char * int | %d gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_Structstrings.c -o R_init_Structstrings.o gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'F:/biocbuild/bbs-3.19-bioc/R/library/IRanges/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/S4Vectors/include' -I"c:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o gcc -shared -s -static-libgcc -o Structstrings.dll tmp.def DotBracketDataFrame_class.o IRanges_stubs.o R_init_Structstrings.o S4Vectors_stubs.o utils.o -Lc:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.19-bioc/meat/Structstrings.buildbin-libdir/00LOCK-Structstrings/00new/Structstrings/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'Structstrings' as Structstrings_1.20.0.zip * DONE (Structstrings)