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###
### Running command:
###
###   chmod a+r DMRcate -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DMRcate
###
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* checking for file 'DMRcate/DESCRIPTION' ... OK
* preparing 'DMRcate':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'EPICv1_and_450K.Rnw' using knitr
--- finished re-building 'EPICv1_and_450K.Rnw'

--- re-building 'EPICv2.Rnw' using knitr

Quitting from EPICv2.Rnw:110-115 [cpg.annotate]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! cannot subset by character when names are NULL
---
Backtrace:
     x
  1. \-DMRcate::cpg.annotate(...)
  2.   +-BiocGenerics::cbind(anno, EPICv2manifest[rownames(anno), 73:80])
  3.   | \-BiocGenerics (local) standardGeneric("cbind")
  4.   |   +-BiocGenerics::eval(quote(list(...)), env)
  5.   |   \-base::eval(quote(list(...)), env)
  6.   |     \-base::eval(quote(list(...)), env)
  7.   +-EPICv2manifest[rownames(anno), 73:80]
  8.   \-EPICv2manifest[rownames(anno), 73:80]
  9.     \-S4Vectors:::subset_along_ROWS(x, i, drop = drop)
 10.       +-S4Vectors::extractROWS(x, i)
 11.       \-S4Vectors::extractROWS(x, i)
 12.         \-S4Vectors::normalizeSingleBracketSubscript(i, x, as.NSBS = TRUE)
 13.           +-S4Vectors::NSBS(...)
 14.           \-S4Vectors::NSBS(...)
 15.             \-S4Vectors:::.subscript_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'EPICv2.Rnw' failed with diagnostics:
cannot subset by character when names are NULL
--- failed re-building 'EPICv2.Rnw'

--- re-building 'sequencing.Rnw' using knitr
--- finished re-building 'sequencing.Rnw'

SUMMARY: processing the following file failed:
  'EPICv2.Rnw'

Error: Vignette re-building failed.
Execution halted