############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:KOdata.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings KOdata_1.33.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/KOdata.Rcheck’ * using R Under development (unstable) (2024-10-21 r87258) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘KOdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘KOdata’ version ‘1.33.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘KOdata’ can be installed ... OK * checking installed package size ... INFO installed size is 53.6Mb sub-directories of 1Mb or more: data 53.5Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... NOTE checkRd: (-1) KO_data.Rd:9: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) KO_data.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) gene_cell_info.Rd:9: Lost braces in \itemize; meant \describe ? checkRd: (-1) gene_cell_info.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) gene_cell_info.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) gene_cell_info.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) gene_cell_info.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) gene_cell_info.Rd:14: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 55.7 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.21-data-experiment/meat/KOdata.Rcheck/00check.log’ for details.