Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-09-24 11:44 -0400 (Tue, 24 Sep 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4448 |
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4455 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4453 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4486 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4433 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4432 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2255/2260 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
zenith 1.7.0 (landing page) Gabriel Hoffman
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the zenith package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/zenith.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: zenith |
Version: 1.7.0 |
Command: chmod a+r zenith -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data zenith |
StartedAt: 2024-09-23 21:58:58 -0400 (Mon, 23 Sep 2024) |
EndedAt: 2024-09-23 22:00:34 -0400 (Mon, 23 Sep 2024) |
EllapsedTime: 95.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r zenith -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data zenith ### ############################################################################## ############################################################################## * checking for file 'zenith/DESCRIPTION' ... OK * preparing 'zenith': * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: zenith * saving partial Rd database * creating vignettes ... ERROR --- re-building 'loading_genesets.Rmd' using rmarkdown --- finished re-building 'loading_genesets.Rmd' --- re-building 'zenith.Rmd' using rmarkdown Quitting from lines 35-73 [standard] (zenith.Rmd) Error: processing vignette 'zenith.Rmd' failed with diagnostics: evaluation nested too deeply: infinite recursion / options(expressions=)? --- failed re-building 'zenith.Rmd' SUMMARY: processing the following file failed: 'zenith.Rmd' Error: Vignette re-building failed. Execution halted