############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data trigger ### ############################################################################## ############################################################################## * checking for file ‘trigger/DESCRIPTION’ ... OK * preparing ‘trigger’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘trigger’ ... ** this is package ‘trigger’ version ‘1.53.0’ ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trigger.c -o trigger.o trigger.c: In function ‘order_c’: trigger.c:54:8: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 54 | p = Calloc(*n, double*); | ^~~~~~ | calloc trigger.c:54:19: error: expected expression before ‘double’ 54 | p = Calloc(*n, double*); | ^~~~~~ trigger.c:60:4: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 60 | Free(p); | ^~~~ | free trigger.c: In function ‘sec_link_stat’: trigger.c:89:18: error: expected expression before ‘int’ 89 | ll = Calloc(*ng, int); | ^~~ trigger.c:90:18: error: expected expression before ‘double’ 90 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:91:18: error: expected expression before ‘double’ 91 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:92:18: error: expected expression before ‘double’ 92 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:93:18: error: expected expression before ‘double’ 93 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:94:18: error: expected expression before ‘double’ 94 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c: In function ‘sec_link_stat_x’: trigger.c:160:18: error: expected expression before ‘int’ 160 | ll = Calloc(*ng, int); | ^~~ trigger.c:161:18: error: expected expression before ‘double’ 161 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:162:18: error: expected expression before ‘double’ 162 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:163:18: error: expected expression before ‘double’ 163 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:164:18: error: expected expression before ‘double’ 164 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:165:18: error: expected expression before ‘double’ 165 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c: In function ‘condi_indep_stat’: trigger.c:244:18: error: expected expression before ‘int’ 244 | ll = Calloc(*ng, int); | ^~~ trigger.c:245:18: error: expected expression before ‘double’ 245 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:246:18: error: expected expression before ‘double’ 246 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:247:18: error: expected expression before ‘double’ 247 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:248:18: error: expected expression before ‘double’ 248 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:249:18: error: expected expression before ‘double’ 249 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c: In function ‘condi_indep_stat_x’: trigger.c:323:18: error: expected expression before ‘int’ 323 | ll = Calloc(*ng, int); | ^~~ trigger.c:324:18: error: expected expression before ‘double’ 324 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:325:18: error: expected expression before ‘double’ 325 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:326:18: error: expected expression before ‘double’ 326 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:327:18: error: expected expression before ‘double’ 327 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:328:18: error: expected expression before ‘double’ 328 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c: In function ‘condi_indep_stat_rx’: trigger.c:406:18: error: expected expression before ‘int’ 406 | ll = Calloc(*ng, int); | ^~~ trigger.c:407:18: error: expected expression before ‘double’ 407 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:408:18: error: expected expression before ‘double’ 408 | mc = Calloc(*ng, double); | ^~~~~~ trigger.c:409:18: error: expected expression before ‘double’ 409 | xc = Calloc(*ng, double); | ^~~~~~ trigger.c:410:18: error: expected expression before ‘double’ 410 | xx = Calloc(*ng, double); | ^~~~~~ trigger.c:411:18: error: expected expression before ‘double’ 411 | cc = Calloc(*ng, double); | ^~~~~~ trigger.c: In function ‘link_stat’: trigger.c:483:18: error: expected expression before ‘int’ 483 | ll = Calloc(*ng, int); | ^~~ trigger.c:484:18: error: expected expression before ‘double’ 484 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:485:18: error: expected expression before ‘double’ 485 | xs = Calloc(*ng, double); | ^~~~~~ trigger.c: In function ‘link_stat_xx’: trigger.c:548:18: error: expected expression before ‘int’ 548 | ll = Calloc(*ng, int); | ^~~ trigger.c:549:18: error: expected expression before ‘double’ 549 | mx = Calloc(*ng, double); | ^~~~~~ trigger.c:550:18: error: expected expression before ‘double’ 550 | xs = Calloc(*ng, double); | ^~~~~~ make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: trigger.o] Error 1 ERROR: compilation failed for package ‘trigger’ * removing ‘/tmp/Rtmpdh9x9u/Rinst76bfe4cc0710d/trigger’ ----------------------------------- ERROR: package installation failed