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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:sesame.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings sesame_1.25.3.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/sesame.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.25.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 29.902  0.721  30.627
inferSex                      21.228  0.445  21.676
sesameQC_calcStats            17.404  0.203  17.609
imputeBetas                   16.540  0.796  17.337
sesameQC_plotHeatSNPs         16.312  0.271  16.586
ELBAR                         14.222  0.323  14.546
diffRefSet                    13.516  0.846  14.366
inferSpecies                  12.530  0.968  13.501
sesameQC_plotBar              10.954  0.239  11.194
getRefSet                     10.681  0.401  11.083
compareMouseStrainReference   10.764  0.215  10.981
compareReference              10.382  0.173  10.557
matchDesign                   10.330  0.194  10.529
sesameQC_plotBetaByDesign     10.221  0.216  10.439
visualizeGene                  8.318  0.287   8.607
DMR                            8.091  0.300   8.392
sdf_read_table                 7.193  0.196   7.390
inferStrain                    6.685  0.526   7.214
estimateLeukocyte              6.755  0.397   7.153
DML                            6.402  0.390   6.799
inferTissue                    6.265  0.169   6.435
dyeBiasCorrMostBalanced        5.935  0.291   6.227
deidentify                     5.832  0.294   6.131
getMask                        5.416  0.306   5.726
createUCSCtrack                5.378  0.222   5.604
dyeBiasNL                      5.182  0.188   5.371
openSesame                     4.928  0.199   5.134
probeSuccessRate               4.870  0.240   5.110
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK