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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:sesame.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings sesame_1.25.3.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/sesame.Rcheck’
* using R Under development (unstable) (2025-03-02 r87868)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.25.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 35.846  1.378  37.447
inferSex                      23.447  1.158  24.725
sesameQC_calcStats            22.758  1.699  24.635
sesameQC_plotHeatSNPs         19.885  1.688  21.751
imputeBetas                   18.600  1.452  20.184
ELBAR                         16.116  2.832  19.165
diffRefSet                    15.540  0.624  16.310
sesameQC_plotBar              14.320  0.474  14.913
inferSpecies                  13.980  0.698  14.775
compareMouseStrainReference   13.049  0.402  13.547
sesameQC_plotBetaByDesign     11.995  1.252  13.346
getRefSet                     12.207  0.417  12.710
matchDesign                   11.182  0.776  12.050
compareReference              11.423  0.513  12.042
visualizeGene                  9.393  0.710  10.225
DML                            8.840  1.242  10.162
sdf_read_table                 9.185  0.409   9.707
DMR                            8.953  0.292   9.320
estimateLeukocyte              8.045  0.525   8.618
inferStrain                    7.888  0.615   8.563
inferTissue                    7.200  1.270   8.552
dyeBiasCorrMostBalanced        6.984  0.290   7.332
getMask                        6.539  0.601   7.202
createUCSCtrack                6.099  0.337   6.493
dyeBiasNL                      5.982  0.402   6.417
deidentify                     5.967  0.315   6.346
probeSuccessRate               5.464  0.436   5.964
openSesame                     5.187  0.631   5.879
bisConversionControl           4.872  0.279   5.217
reIdentify                     4.855  0.212   5.102
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK