############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r scone -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data scone ### ############################################################################## ############################################################################## * checking for file 'scone/DESCRIPTION' ... OK * preparing 'scone': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'PsiNorm.Rmd' using rmarkdown Quitting from lines 199-202 [psinorm-hdf5] (PsiNorm.Rmd) Error: processing vignette 'PsiNorm.Rmd' failed with diagnostics: Failed to find a colSums2() method for SVT_SparseMatrix objects. --- failed re-building 'PsiNorm.Rmd' --- re-building 'sconeTutorial.Rmd' using rmarkdown --- finished re-building 'sconeTutorial.Rmd' SUMMARY: processing the following file failed: 'PsiNorm.Rmd' Error: Vignette re-building failed. Execution halted