############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scone ### ############################################################################## ############################################################################## * checking for file ‘scone/DESCRIPTION’ ... OK * preparing ‘scone’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘PsiNorm.Rmd’ using rmarkdown 2024-07-04 18:06:22.609 R[77107:272769166] XType: com.apple.fonts is not accessible. 2024-07-04 18:06:22.618 R[77107:272769166] XType: XTFontStaticRegistry is enabled. Quitting from lines 199-202 [psinorm-hdf5] (PsiNorm.Rmd) Error: processing vignette 'PsiNorm.Rmd' failed with diagnostics: Failed to find a colSums2() method for SVT_SparseMatrix objects. --- failed re-building ‘PsiNorm.Rmd’ --- re-building ‘sconeTutorial.Rmd’ using rmarkdown --- finished re-building ‘sconeTutorial.Rmd’ SUMMARY: processing the following file failed: ‘PsiNorm.Rmd’ Error: Vignette re-building failed. Execution halted