############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ramr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’ * installing *source* package ‘ramr’ ... ** this is package ‘ramr’ version ‘1.15.2’ ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++20 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_compute_logp.cpp -o rcpp_compute_logp.o rcpp_compute_logp.cpp:150:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_compute_xiqr.cpp -o rcpp_compute_xiqr.o rcpp_compute_xiqr.cpp:37:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_create_granges.cpp -o rcpp_create_granges.o clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_filter_threshold.cpp -o rcpp_filter_threshold.o rcpp_filter_threshold.cpp:32:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_fit_beta.cpp -o rcpp_fit_beta.o rcpp_fit_beta.cpp:28:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_fit_betabinom.cpp -o rcpp_fit_betabinom.o clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_fit_binom.cpp -o rcpp_fit_binom.o rcpp_fit_binom.cpp:33:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_generate_random_values.cpp -o rcpp_generate_random_values.o clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_get_iqr.cpp -o rcpp_get_iqr.o rcpp_get_iqr.cpp:35:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_get_meanvar.cpp -o rcpp_get_meanvar.o rcpp_get_meanvar.cpp:62:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_helper_functions.cpp -o rcpp_helper_functions.o clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_prepare_data.cpp -o rcpp_prepare_data.o rcpp_prepare_data.cpp:87:16: warning: unused variable 'nthreads' [-Wunused-variable] const size_t nthreads = thr->size() - 1; // 'thr' always starts with 0 and ends with 'nrow' ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_test_omp.cpp -o rcpp_test_omp.o clang++ -arch x86_64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o ramr.so RcppExports.o rcpp_compute_logp.o rcpp_compute_xiqr.o rcpp_create_granges.o rcpp_filter_threshold.o rcpp_fit_beta.o rcpp_fit_betabinom.o rcpp_fit_binom.o rcpp_generate_random_values.o rcpp_get_iqr.o rcpp_get_meanvar.o rcpp_helper_functions.o rcpp_prepare_data.o rcpp_test_omp.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-ramr/00new/ramr/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ramr)