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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:partCNV.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings partCNV_1.3.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/partCNV.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘partCNV/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘partCNV’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘partCNV’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GetCytoLocation: no visible global function definition for ‘data’
GetExprCountCyto: no visible global function definition for ‘data’
Undefined global functions or variables:
  data
Consider adding
  importFrom("utils", "data")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘partCNV-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GetCytoLocation
> ### Title: Get exact location of the interested cytogenetics feature
> ### Aliases: GetCytoLocation
> 
> ### ** Examples
> 
> ### example 1
> GetCytoLocation(cyto_feature = "chr20(q11.1-q13.1)")
loading from cache
Error: failed to load resource
  name: AH53178
  title: UCSC cytoBand track for hg38
  reason: unknown input format
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
       ▆
    1. └─partCNV::GetCytoLocation(cyto_feature = "chr20(q11.1-q13.1)") at test-partCNVH.R:3:3
    2.   ├─base::data.frame(AnnotationHub()[["AH53178"]])
    3.   ├─AnnotationHub()[["AH53178"]]
    4.   └─AnnotationHub()[["AH53178"]]
    5.     └─AnnotationHub (local) .local(x, i, j = j, ...)
    6.       └─AnnotationHub:::.Hub_get1(x[idx], force = force, verbose = verbose)
    7.         └─base::tryCatch(...)
    8.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
    9.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
   10.               └─value[[3L]](cond)
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 1 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/partCNV.Rcheck/00check.log’
for details.